| 1 | /********************************************************************* |
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| 2 | Blosc - Blocked Suffling and Compression Library |
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| 3 | |
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| 4 | Author: Francesc Alted (faltet@pytables.org) |
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| 5 | Creation date: 2009-05-20 |
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| 6 | |
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| 7 | See LICENSES/BLOSC.txt for details about copyright and rights to use. |
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| 8 | **********************************************************************/ |
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| 9 | |
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| 10 | |
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| 11 | #include <stdlib.h> |
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| 12 | #include <stdio.h> |
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| 13 | #include <string.h> |
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| 14 | #include <sys/types.h> |
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| 15 | #include <sys/stat.h> |
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| 16 | #include <assert.h> |
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| 17 | #include <pthread.h> |
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| 18 | #include "blosc.h" |
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| 19 | #include "blosclz.h" |
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| 20 | #include "shuffle.h" |
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| 21 | |
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| 22 | #ifdef _WIN32 |
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| 23 | #include <windows.h> |
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| 24 | #include "stdint-windows.h" |
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| 25 | #else |
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| 26 | #include <stdint.h> |
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| 27 | #include <unistd.h> |
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| 28 | #include <inttypes.h> |
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| 29 | #endif /* _WIN32 */ |
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| 30 | |
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| 31 | |
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| 32 | |
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| 33 | /* Minimal buffer size to be compressed */ |
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| 34 | #define MIN_BUFFERSIZE 128 /* Cannot be smaller than 66 */ |
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| 35 | |
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| 36 | /* Maximum typesize before considering buffer as a stream of bytes. */ |
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| 37 | #define MAX_TYPESIZE 255 /* Cannot be larger than 255 */ |
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| 38 | |
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| 39 | /* The maximum number of splits in a block for compression */ |
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| 40 | #define MAX_SPLITS 16 /* Cannot be larger than 128 */ |
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| 41 | |
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| 42 | /* The maximum number of threads (for some static arrays) */ |
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| 43 | #define MAX_THREADS 64 |
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| 44 | |
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| 45 | /* The size of L1 cache. 32 KB is quite common nowadays. */ |
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| 46 | #define L1 (32*1024) |
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| 47 | |
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| 48 | |
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| 49 | /* Global variables for main logic */ |
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| 50 | int32_t init_temps_done = 0; /* temporaries for compr/decompr initialized? */ |
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| 51 | size_t force_blocksize = 0; /* should we force the use of a blocksize? */ |
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| 52 | |
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| 53 | /* Global variables for threads */ |
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| 54 | int32_t nthreads = 1; /* number of desired threads in pool */ |
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| 55 | int32_t init_threads_done = 0; /* pool of threads initialized? */ |
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| 56 | int32_t end_threads = 0; /* should exisiting threads end? */ |
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| 57 | int32_t giveup; /* should (de-)compression give up? */ |
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| 58 | int32_t nblock = -1; /* block counter */ |
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| 59 | pthread_t threads[MAX_THREADS]; /* opaque structure for threads */ |
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| 60 | int32_t tids[MAX_THREADS]; /* ID per each thread */ |
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| 61 | pthread_attr_t ct_attr; /* creation time attributes for threads */ |
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| 62 | |
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| 63 | /* Syncronization variables */ |
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| 64 | pthread_mutex_t count_mutex; |
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| 65 | pthread_barrier_t barr_init; |
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| 66 | pthread_barrier_t barr_inter; |
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| 67 | pthread_barrier_t barr_finish; |
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| 68 | |
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| 69 | /* Structure for parameters in (de-)compression threads */ |
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| 70 | struct thread_data { |
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| 71 | size_t typesize; |
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| 72 | size_t blocksize; |
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| 73 | int32_t compress; |
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| 74 | int32_t clevel; |
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| 75 | int32_t shuffle; |
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| 76 | int32_t ntbytes; |
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| 77 | uint32_t nbytes; |
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| 78 | uint32_t nblocks; |
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| 79 | uint32_t leftover; |
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| 80 | uint32_t *bstarts; /* start pointers for each block */ |
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| 81 | uint8_t *src; |
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| 82 | uint8_t *dest; |
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| 83 | uint8_t *tmp[MAX_THREADS]; |
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| 84 | uint8_t *tmp2[MAX_THREADS]; |
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| 85 | } params; |
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| 86 | |
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| 87 | |
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| 88 | /* Structure for parameters meant for keeping track of current temporaries */ |
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| 89 | struct temp_data { |
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| 90 | int32_t nthreads; |
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| 91 | size_t typesize; |
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| 92 | size_t blocksize; |
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| 93 | } current_temp; |
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| 94 | |
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| 95 | |
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| 96 | |
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| 97 | /* Shuffle & compress a single block */ |
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| 98 | static int blosc_c(size_t blocksize, int32_t leftoverblock, |
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| 99 | uint32_t ntbytes, uint32_t nbytes, |
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| 100 | uint8_t *src, uint8_t *dest, uint8_t *tmp) |
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| 101 | { |
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| 102 | size_t j, neblock, nsplits; |
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| 103 | int32_t cbytes; /* number of compressed bytes in split */ |
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| 104 | int32_t ctbytes = 0; /* number of compressed bytes in block */ |
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| 105 | int32_t maxout; |
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| 106 | uint8_t *_tmp; |
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| 107 | size_t typesize = params.typesize; |
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| 108 | |
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| 109 | if (params.shuffle && (typesize > 1)) { |
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| 110 | /* Shuffle this block (this makes sense only if typesize > 1) */ |
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| 111 | shuffle(typesize, blocksize, src, tmp); |
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| 112 | _tmp = tmp; |
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| 113 | } |
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| 114 | else { |
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| 115 | _tmp = src; |
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| 116 | } |
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| 117 | |
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| 118 | /* Compress for each shuffled slice split for this block. */ |
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| 119 | /* If typesize is too large, neblock is too small or we are in a |
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| 120 | leftover block, do not split at all. */ |
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| 121 | if ((typesize <= MAX_SPLITS) && (blocksize/typesize) >= MIN_BUFFERSIZE && |
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| 122 | (!leftoverblock)) { |
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| 123 | nsplits = typesize; |
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| 124 | } |
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| 125 | else { |
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| 126 | nsplits = 1; |
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| 127 | } |
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| 128 | neblock = blocksize / nsplits; |
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| 129 | for (j = 0; j < nsplits; j++) { |
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| 130 | dest += sizeof(int32_t); |
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| 131 | ntbytes += sizeof(int32_t); |
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| 132 | ctbytes += sizeof(int32_t); |
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| 133 | maxout = neblock; |
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| 134 | if (ntbytes+maxout > nbytes) { |
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| 135 | maxout = nbytes - ntbytes; /* avoid buffer overrun */ |
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| 136 | if (maxout <= 0) { |
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| 137 | return 0; /* non-compressible block */ |
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| 138 | } |
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| 139 | } |
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| 140 | cbytes = blosclz_compress(params.clevel, _tmp+j*neblock, neblock, |
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| 141 | dest, maxout-1); |
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| 142 | if (cbytes >= maxout) { |
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| 143 | /* Buffer overrun caused by blosclz_compress (should never happen) */ |
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| 144 | return -1; |
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| 145 | } |
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| 146 | else if (cbytes < 0) { |
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| 147 | /* cbytes should never be negative */ |
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| 148 | return -2; |
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| 149 | } |
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| 150 | else if (cbytes == 0) { |
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| 151 | /* The compressor has been unable to compress data significantly. */ |
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| 152 | /* Before doing the copy, check that we are not running into a |
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| 153 | buffer overflow. */ |
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| 154 | if ((ntbytes+neblock) > nbytes) { |
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| 155 | return 0; /* Non-compressible data */ |
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| 156 | } |
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| 157 | memcpy(dest, _tmp+j*neblock, neblock); |
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| 158 | cbytes = neblock; |
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| 159 | } |
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| 160 | ((uint32_t *)(dest))[-1] = cbytes; |
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| 161 | dest += cbytes; |
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| 162 | ntbytes += cbytes; |
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| 163 | ctbytes += cbytes; |
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| 164 | } /* Closes j < nsplits */ |
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| 165 | |
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| 166 | return ctbytes; |
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| 167 | } |
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| 168 | |
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| 169 | |
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| 170 | /* Decompress & unshuffle a single block */ |
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| 171 | static int blosc_d(size_t blocksize, int32_t leftoverblock, |
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| 172 | uint8_t *src, uint8_t *dest, uint8_t *tmp, uint8_t *tmp2) |
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| 173 | { |
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| 174 | int32_t j, neblock, nsplits; |
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| 175 | int32_t nbytes; /* number of decompressed bytes in split */ |
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| 176 | int32_t cbytes; /* number of compressed bytes in split */ |
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| 177 | int32_t ctbytes = 0; /* number of compressed bytes in block */ |
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| 178 | int32_t ntbytes = 0; /* number of uncompressed bytes in block */ |
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| 179 | uint8_t *_tmp; |
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| 180 | size_t typesize = params.typesize; |
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| 181 | size_t shuffle = params.shuffle; |
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| 182 | |
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| 183 | if (shuffle && (typesize > 1)) { |
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| 184 | _tmp = tmp; |
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| 185 | } |
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| 186 | else { |
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| 187 | _tmp = dest; |
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| 188 | } |
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| 189 | |
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| 190 | /* Compress for each shuffled slice split for this block. */ |
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| 191 | if ((typesize <= MAX_SPLITS) && (blocksize/typesize) >= MIN_BUFFERSIZE && |
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| 192 | (!leftoverblock)) { |
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| 193 | nsplits = typesize; |
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| 194 | } |
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| 195 | else { |
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| 196 | nsplits = 1; |
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| 197 | } |
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| 198 | neblock = blocksize / nsplits; |
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| 199 | for (j = 0; j < nsplits; j++) { |
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| 200 | cbytes = ((uint32_t *)(src))[0]; /* amount of compressed bytes */ |
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| 201 | src += sizeof(int32_t); |
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| 202 | ctbytes += sizeof(int32_t); |
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| 203 | /* Uncompress */ |
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| 204 | if (cbytes == neblock) { |
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| 205 | memcpy(_tmp, src, neblock); |
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| 206 | nbytes = neblock; |
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| 207 | } |
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| 208 | else { |
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| 209 | nbytes = blosclz_decompress(src, cbytes, _tmp, neblock); |
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| 210 | if (nbytes != neblock) { |
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| 211 | return -2; |
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| 212 | } |
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| 213 | } |
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| 214 | src += cbytes; |
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| 215 | ctbytes += cbytes; |
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| 216 | _tmp += nbytes; |
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| 217 | ntbytes += nbytes; |
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| 218 | } /* Closes j < nsplits */ |
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| 219 | |
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| 220 | if (shuffle && (typesize > 1)) { |
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| 221 | if ((uintptr_t)dest % 16 == 0) { |
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| 222 | /* 16-bytes aligned dest. SSE2 unshuffle will work. */ |
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| 223 | unshuffle(typesize, blocksize, tmp, dest); |
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| 224 | } |
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| 225 | else { |
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| 226 | /* dest is not aligned. Use tmp2, which is aligned, and copy. */ |
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| 227 | unshuffle(typesize, blocksize, tmp, tmp2); |
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| 228 | memcpy(dest, tmp2, blocksize); |
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| 229 | } |
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| 230 | } |
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| 231 | |
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| 232 | /* Return the number of uncompressed bytes */ |
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| 233 | return ntbytes; |
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| 234 | } |
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| 235 | |
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| 236 | |
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| 237 | /* Serial version for compression/decompression */ |
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| 238 | int serial_blosc(void) |
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| 239 | { |
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| 240 | uint32_t j, bsize, leftoverblock; |
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| 241 | int32_t cbytes; |
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| 242 | int32_t compress = params.compress; |
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| 243 | size_t blocksize = params.blocksize; |
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| 244 | int32_t ntbytes = params.ntbytes; |
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| 245 | int32_t nbytes = params.nbytes; |
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| 246 | uint32_t nblocks = params.nblocks; |
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| 247 | int32_t leftover = params.nbytes % params.blocksize; |
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| 248 | uint32_t *bstarts = params.bstarts; |
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| 249 | uint8_t *src = params.src; |
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| 250 | uint8_t *dest = params.dest; |
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| 251 | uint8_t *tmp = params.tmp[0]; /* tmp for thread 0 */ |
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| 252 | uint8_t *tmp2 = params.tmp2[0]; /* tmp2 for thread 0 */ |
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| 253 | |
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| 254 | for (j = 0; j < nblocks; j++) { |
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| 255 | if (compress) { |
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| 256 | bstarts[j] = ntbytes; |
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| 257 | } |
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| 258 | bsize = blocksize; |
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| 259 | leftoverblock = 0; |
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| 260 | if ((j == nblocks - 1) && (leftover > 0)) { |
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| 261 | bsize = leftover; |
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| 262 | leftoverblock = 1; |
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| 263 | } |
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| 264 | if (compress) { |
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| 265 | cbytes = blosc_c(bsize, leftoverblock, ntbytes, nbytes, |
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| 266 | src+j*blocksize, dest+bstarts[j], tmp); |
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| 267 | if (cbytes == 0) { |
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| 268 | ntbytes = 0; /* uncompressible data */ |
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| 269 | break; |
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| 270 | } |
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| 271 | } |
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| 272 | else { |
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| 273 | cbytes = blosc_d(bsize, leftoverblock, |
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| 274 | src+bstarts[j], dest+j*blocksize, tmp, tmp2); |
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| 275 | } |
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| 276 | if (cbytes < 0) { |
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| 277 | ntbytes = cbytes; /* error in blosc_c / blosc_d */ |
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| 278 | break; |
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| 279 | } |
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| 280 | ntbytes += cbytes; |
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| 281 | } |
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| 282 | |
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| 283 | /* Final check for ntbytes (only in compression mode) */ |
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| 284 | if (compress) { |
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| 285 | if (ntbytes == nbytes) { |
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| 286 | ntbytes = 0; /* non-compressible data */ |
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| 287 | } |
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| 288 | else if (ntbytes > nbytes) { |
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| 289 | fprintf(stderr, "The impossible happened: buffer overflow!\n"); |
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| 290 | ntbytes = -5; /* too large buffer */ |
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| 291 | } |
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| 292 | } /* Close j < nblocks */ |
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| 293 | |
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| 294 | return ntbytes; |
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| 295 | } |
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| 296 | |
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| 297 | |
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| 298 | /* Threaded version for compression/decompression */ |
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| 299 | int parallel_blosc(void) |
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| 300 | { |
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| 301 | int32_t rc; |
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| 302 | |
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| 303 | /* Synchronization point for all threads (wait for initialization) */ |
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| 304 | rc = pthread_barrier_wait(&barr_init); |
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| 305 | if (rc != 0 && rc != PTHREAD_BARRIER_SERIAL_THREAD) { |
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| 306 | printf("Could not wait on barrier (init)\n"); |
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| 307 | exit(-1); |
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| 308 | } |
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| 309 | /* Synchronization point for all threads (wait for finalization) */ |
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| 310 | rc = pthread_barrier_wait(&barr_finish); |
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| 311 | if (rc != 0 && rc != PTHREAD_BARRIER_SERIAL_THREAD) { |
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| 312 | printf("Could not wait on barrier (finish)\n"); |
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| 313 | exit(-1); |
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| 314 | } |
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| 315 | |
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| 316 | /* Return the total bytes decompressed in threads */ |
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| 317 | return params.ntbytes; |
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| 318 | } |
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| 319 | |
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| 320 | |
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| 321 | /* Convenience functions for creating and releasing temporaries */ |
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| 322 | void create_temporaries(void) |
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| 323 | { |
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| 324 | int32_t tid; |
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| 325 | size_t typesize = params.typesize; |
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| 326 | size_t blocksize = params.blocksize; |
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| 327 | /* Extended blocksize for temporary destination. Extended blocksize |
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| 328 | is only useful for compression in parallel mode, but it doesn't |
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| 329 | hurt other modes either. */ |
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| 330 | size_t ebsize = blocksize + typesize*sizeof(int32_t); |
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| 331 | uint8_t *tmp, *tmp2; |
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| 332 | |
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| 333 | /* Create temporary area for each thread */ |
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| 334 | for (tid = 0; tid < nthreads; tid++) { |
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| 335 | #ifdef _WIN32 |
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| 336 | tmp = (uint8_t *)_aligned_malloc(blocksize, 16); |
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| 337 | tmp2 = (uint8_t *)_aligned_malloc(ebsize, 16); |
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| 338 | #elif defined __APPLE__ |
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| 339 | /* Mac OS X guarantees 16-byte alignment in small allocs */ |
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| 340 | tmp = (uint8_t *)malloc(blocksize); |
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| 341 | tmp2 = (uint8_t *)malloc(ebsize); |
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| 342 | #else |
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| 343 | posix_memalign((void **)&tmp, 16, blocksize); |
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| 344 | posix_memalign((void **)&tmp2, 16, ebsize); |
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| 345 | #endif /* _WIN32 */ |
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| 346 | params.tmp[tid] = tmp; |
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| 347 | params.tmp2[tid] = tmp2; |
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| 348 | } |
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| 349 | |
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| 350 | init_temps_done = 1; |
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| 351 | /* Update params for current temporaries */ |
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| 352 | current_temp.nthreads = nthreads; |
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| 353 | current_temp.typesize = typesize; |
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| 354 | current_temp.blocksize = blocksize; |
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| 355 | |
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| 356 | } |
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| 357 | |
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| 358 | |
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| 359 | void release_temporaries(void) |
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| 360 | { |
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| 361 | int32_t tid; |
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| 362 | uint8_t *tmp, *tmp2; |
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| 363 | |
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| 364 | /* Release buffers */ |
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| 365 | for (tid = 0; tid < nthreads; tid++) { |
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| 366 | tmp = params.tmp[tid]; |
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| 367 | tmp2 = params.tmp2[tid]; |
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| 368 | #ifdef _WIN32 |
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| 369 | _aligned_free(tmp); |
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| 370 | _aligned_free(tmp2); |
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| 371 | #else |
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| 372 | free(tmp); |
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| 373 | free(tmp2); |
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| 374 | #endif /* _WIN32 */ |
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| 375 | } |
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| 376 | |
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| 377 | init_temps_done = 0; |
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| 378 | |
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| 379 | } |
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| 380 | |
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| 381 | |
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| 382 | /* Do the compression or decompression of the buffer depending on the |
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| 383 | global params. */ |
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| 384 | int do_job(void) { |
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| 385 | int32_t ntbytes; |
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| 386 | |
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| 387 | /* Initialize/reset temporaries if needed */ |
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| 388 | if (!init_temps_done) { |
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| 389 | create_temporaries(); |
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| 390 | } |
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| 391 | else if (current_temp.nthreads != nthreads || |
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| 392 | current_temp.typesize != params.typesize || |
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| 393 | current_temp.blocksize != params.blocksize) { |
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| 394 | release_temporaries(); |
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| 395 | create_temporaries(); |
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| 396 | } |
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| 397 | |
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| 398 | /* Run the serial version when nthreads is 1 or when the buffers are |
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| 399 | not much larger than blocksize */ |
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| 400 | if (nthreads == 1 || (params.nbytes / params.blocksize) <= 1) { |
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| 401 | ntbytes = serial_blosc(); |
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| 402 | } |
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| 403 | else { |
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| 404 | ntbytes = parallel_blosc(); |
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| 405 | } |
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| 406 | |
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| 407 | return ntbytes; |
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| 408 | } |
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| 409 | |
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| 410 | |
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| 411 | size_t compute_blocksize(int32_t clevel, size_t typesize, size_t nbytes) |
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| 412 | { |
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| 413 | size_t blocksize; |
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| 414 | |
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| 415 | blocksize = nbytes; /* Start by a whole buffer as blocksize */ |
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| 416 | |
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| 417 | if (force_blocksize) { |
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| 418 | blocksize = force_blocksize; |
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| 419 | /* Check that forced blocksize is not too small nor too large */ |
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| 420 | if (blocksize < MIN_BUFFERSIZE) { |
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| 421 | blocksize = MIN_BUFFERSIZE; |
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| 422 | } |
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| 423 | } |
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| 424 | else if (nbytes >= L1*typesize) { |
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| 425 | blocksize = L1 * typesize; |
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| 426 | if (clevel <= 3) { |
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| 427 | blocksize /= 4; |
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| 428 | } |
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| 429 | else if (clevel <= 6) { |
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| 430 | blocksize /= 2; |
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| 431 | } |
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| 432 | else if (clevel < 9) { |
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| 433 | blocksize *= 1; |
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| 434 | } |
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| 435 | else { |
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| 436 | blocksize *= 2; |
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| 437 | } |
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| 438 | } |
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| 439 | |
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| 440 | /* Check that blocksize is not too large */ |
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| 441 | if (blocksize > nbytes) { |
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| 442 | blocksize = nbytes; |
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| 443 | } |
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| 444 | |
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| 445 | /* blocksize must be a multiple of the typesize */ |
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| 446 | blocksize = blocksize / typesize * typesize; |
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| 447 | |
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| 448 | return blocksize; |
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| 449 | } |
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| 450 | |
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| 451 | |
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| 452 | unsigned int blosc_compress(int clevel, int shuffle, size_t typesize, |
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| 453 | size_t nbytes, const void *src, void *dest) |
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| 454 | { |
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| 455 | uint8_t *_dest=NULL; /* current pos for destination buffer */ |
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| 456 | uint8_t *flags; /* flags for header */ |
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| 457 | uint32_t nblocks; /* number of total blocks in buffer */ |
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| 458 | uint32_t leftover; /* extra bytes at end of buffer */ |
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| 459 | uint32_t *bstarts; /* start pointers for each block */ |
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| 460 | size_t blocksize; /* length of the block in bytes */ |
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| 461 | uint32_t ntbytes = 0; /* the number of compressed bytes */ |
|---|
| 462 | uint32_t *ntbytes_; /* placeholder for bytes in output buffer */ |
|---|
| 463 | |
|---|
| 464 | /* Compression level */ |
|---|
| 465 | if (clevel < 0 || clevel > 9) { |
|---|
| 466 | /* If clevel not in 0..9, print an error */ |
|---|
| 467 | fprintf(stderr, "`clevel` parameter must be between 0 and 9!\n"); |
|---|
| 468 | return -10; |
|---|
| 469 | } |
|---|
| 470 | else if (clevel == 0) { |
|---|
| 471 | /* No compression wanted. Just return without doing anything else. */ |
|---|
| 472 | return 0; |
|---|
| 473 | } |
|---|
| 474 | else if (nbytes < MIN_BUFFERSIZE) { |
|---|
| 475 | /* Too little buffer. Just return without doing anything else. */ |
|---|
| 476 | return 0; |
|---|
| 477 | } |
|---|
| 478 | |
|---|
| 479 | /* Shuffle */ |
|---|
| 480 | if (shuffle != 0 && shuffle != 1) { |
|---|
| 481 | fprintf(stderr, "`shuffle` parameter must be either 0 or 1!\n"); |
|---|
| 482 | return -10; |
|---|
| 483 | } |
|---|
| 484 | |
|---|
| 485 | /* Get the blocksize */ |
|---|
| 486 | blocksize = compute_blocksize(clevel, typesize, nbytes); |
|---|
| 487 | |
|---|
| 488 | /* Compute number of blocks in buffer */ |
|---|
| 489 | nblocks = nbytes / blocksize; |
|---|
| 490 | leftover = nbytes % blocksize; |
|---|
| 491 | nblocks = (leftover>0)? nblocks+1: nblocks; |
|---|
| 492 | |
|---|
| 493 | /* Check typesize limits */ |
|---|
| 494 | if (typesize > MAX_TYPESIZE) { |
|---|
| 495 | /* If typesize is too large, treat buffer as an 1-byte stream. */ |
|---|
| 496 | typesize = 1; |
|---|
| 497 | } |
|---|
| 498 | |
|---|
| 499 | _dest = (uint8_t *)(dest); |
|---|
| 500 | /* Write header for this block */ |
|---|
| 501 | _dest[0] = BLOSC_VERSION_FORMAT; /* blosc format version */ |
|---|
| 502 | _dest[1] = BLOSCLZ_VERSION_FORMAT; /* blosclz format version */ |
|---|
| 503 | flags = _dest+2; /* flags */ |
|---|
| 504 | _dest[2] = 0; /* zeroes flags */ |
|---|
| 505 | _dest[3] = (uint8_t)typesize; /* type size */ |
|---|
| 506 | _dest += 4; |
|---|
| 507 | ntbytes += 4; |
|---|
| 508 | ((uint32_t *)_dest)[0] = nbytes; /* size of the buffer */ |
|---|
| 509 | ((uint32_t *)_dest)[1] = blocksize; /* block size */ |
|---|
| 510 | ntbytes_ = (uint32_t *)(_dest+8); /* compressed buffer size */ |
|---|
| 511 | _dest += sizeof(int32_t)*3; |
|---|
| 512 | ntbytes += sizeof(int32_t)*3; |
|---|
| 513 | bstarts = (uint32_t *)_dest; /* starts for every block */ |
|---|
| 514 | _dest += sizeof(int32_t)*nblocks; /* book space for pointers to */ |
|---|
| 515 | ntbytes += sizeof(int32_t)*nblocks; /* every block in output */ |
|---|
| 516 | |
|---|
| 517 | if (shuffle == 1) { |
|---|
| 518 | /* Shuffle is active */ |
|---|
| 519 | *flags |= 0x1; /* bit 0 set to one in flags */ |
|---|
| 520 | } |
|---|
| 521 | |
|---|
| 522 | /* Populate parameters for compression routines */ |
|---|
| 523 | params.compress = 1; |
|---|
| 524 | params.clevel = clevel; |
|---|
| 525 | params.shuffle = shuffle; |
|---|
| 526 | params.typesize = typesize; |
|---|
| 527 | params.blocksize = blocksize; |
|---|
| 528 | params.ntbytes = ntbytes; |
|---|
| 529 | params.nbytes = nbytes; |
|---|
| 530 | params.nblocks = nblocks; |
|---|
| 531 | params.leftover = leftover; |
|---|
| 532 | params.bstarts = bstarts; |
|---|
| 533 | params.src = (uint8_t *)src; |
|---|
| 534 | params.dest = (uint8_t *)dest; |
|---|
| 535 | |
|---|
| 536 | /* Do the actual compression */ |
|---|
| 537 | ntbytes = do_job(); |
|---|
| 538 | /* Set the number of compressed bytes in header */ |
|---|
| 539 | *ntbytes_ = ntbytes; |
|---|
| 540 | |
|---|
| 541 | assert((int32_t)ntbytes < (int32_t)nbytes); |
|---|
| 542 | return ntbytes; |
|---|
| 543 | } |
|---|
| 544 | |
|---|
| 545 | |
|---|
| 546 | unsigned int blosc_decompress(const void *src, void *dest, size_t dest_size) |
|---|
| 547 | { |
|---|
| 548 | uint8_t *_src=NULL; /* current pos for source buffer */ |
|---|
| 549 | uint8_t *_dest=NULL; /* current pos for destination buffer */ |
|---|
| 550 | uint8_t version, versionlz; /* versions for compressed header */ |
|---|
| 551 | uint8_t flags; /* flags for header */ |
|---|
| 552 | int32_t shuffle = 0; /* do unshuffle? */ |
|---|
| 553 | int32_t ntbytes; /* the number of uncompressed bytes */ |
|---|
| 554 | uint32_t nblocks; /* number of total blocks in buffer */ |
|---|
| 555 | uint32_t leftover; /* extra bytes at end of buffer */ |
|---|
| 556 | uint32_t *bstarts; /* start pointers for each block */ |
|---|
| 557 | uint32_t typesize, blocksize, nbytes, ctbytes; |
|---|
| 558 | |
|---|
| 559 | _src = (uint8_t *)(src); |
|---|
| 560 | _dest = (uint8_t *)(dest); |
|---|
| 561 | |
|---|
| 562 | /* Read the header block */ |
|---|
| 563 | version = _src[0]; /* blosc format version */ |
|---|
| 564 | versionlz = _src[1]; /* blosclz format version */ |
|---|
| 565 | flags = _src[2]; /* flags */ |
|---|
| 566 | typesize = (uint32_t)_src[3]; /* typesize */ |
|---|
| 567 | _src += 4; |
|---|
| 568 | nbytes = ((uint32_t *)_src)[0]; /* buffer size */ |
|---|
| 569 | blocksize = ((uint32_t *)_src)[1]; /* block size */ |
|---|
| 570 | ctbytes = ((uint32_t *)_src)[2]; /* compressed buffer size */ |
|---|
| 571 | _src += sizeof(int32_t)*3; |
|---|
| 572 | bstarts = (uint32_t *)_src; |
|---|
| 573 | /* Compute some params */ |
|---|
| 574 | /* Total blocks */ |
|---|
| 575 | nblocks = nbytes / blocksize; |
|---|
| 576 | leftover = nbytes % blocksize; |
|---|
| 577 | nblocks = (leftover>0)? nblocks+1: nblocks; |
|---|
| 578 | _src += sizeof(int32_t)*nblocks; |
|---|
| 579 | |
|---|
| 580 | /* Check zero typesizes. From Blosc version format 2 on, this value |
|---|
| 581 | has been reserved for future use (most probably to indicate |
|---|
| 582 | uncompressible buffers). */ |
|---|
| 583 | if ((version == 1) && (typesize == 0)) { |
|---|
| 584 | typesize = 256; /* 0 means 256 in format version 1 */ |
|---|
| 585 | } |
|---|
| 586 | |
|---|
| 587 | if (nbytes > dest_size) { |
|---|
| 588 | /* This should never happen but just in case */ |
|---|
| 589 | return -1; |
|---|
| 590 | } |
|---|
| 591 | |
|---|
| 592 | if ((flags & 0x1) == 1) { |
|---|
| 593 | /* Input is shuffled. Unshuffle it. */ |
|---|
| 594 | shuffle = 1; |
|---|
| 595 | } |
|---|
| 596 | |
|---|
| 597 | /* Populate parameters for decompression routines */ |
|---|
| 598 | params.compress = 0; |
|---|
| 599 | params.clevel = 0; /* specific for compression */ |
|---|
| 600 | params.shuffle = shuffle; |
|---|
| 601 | params.typesize = typesize; |
|---|
| 602 | params.blocksize = blocksize; |
|---|
| 603 | params.ntbytes = 0; |
|---|
| 604 | params.nbytes = nbytes; |
|---|
| 605 | params.nblocks = nblocks; |
|---|
| 606 | params.leftover = leftover; |
|---|
| 607 | params.bstarts = bstarts; |
|---|
| 608 | params.src = (uint8_t *)src; |
|---|
| 609 | params.dest = (uint8_t *)dest; |
|---|
| 610 | |
|---|
| 611 | /* Do the actual decompression */ |
|---|
| 612 | ntbytes = do_job(); |
|---|
| 613 | |
|---|
| 614 | assert(ntbytes <= (int32_t)dest_size); |
|---|
| 615 | return ntbytes; |
|---|
| 616 | } |
|---|
| 617 | |
|---|
| 618 | |
|---|
| 619 | /* Decompress & unshuffle several blocks in a single thread */ |
|---|
| 620 | void *t_blosc(void *tids) |
|---|
| 621 | { |
|---|
| 622 | int32_t tid = *(int32_t *)tids; |
|---|
| 623 | int32_t cbytes, ntdest; |
|---|
| 624 | uint32_t tblocks; /* number of blocks per thread */ |
|---|
| 625 | uint32_t leftover2; |
|---|
| 626 | uint32_t tblock; /* limit block on a thread */ |
|---|
| 627 | uint32_t nblock_; /* private copy of nblock */ |
|---|
| 628 | int32_t rc; |
|---|
| 629 | uint32_t bsize, leftoverblock; |
|---|
| 630 | /* Parameters for threads */ |
|---|
| 631 | size_t blocksize; |
|---|
| 632 | size_t ebsize; |
|---|
| 633 | int32_t compress; |
|---|
| 634 | uint32_t nbytes; |
|---|
| 635 | uint32_t ntbytes; |
|---|
| 636 | uint32_t nblocks; |
|---|
| 637 | uint32_t leftover; |
|---|
| 638 | uint32_t *bstarts; |
|---|
| 639 | uint8_t *src; |
|---|
| 640 | uint8_t *dest; |
|---|
| 641 | uint8_t *tmp; |
|---|
| 642 | uint8_t *tmp2; |
|---|
| 643 | |
|---|
| 644 | while (1) { |
|---|
| 645 | /* Meeting point for all threads (wait for initialization) */ |
|---|
| 646 | rc = pthread_barrier_wait(&barr_init); |
|---|
| 647 | if (rc != 0 && rc != PTHREAD_BARRIER_SERIAL_THREAD) { |
|---|
| 648 | printf("Could not wait on barrier (init)\n"); |
|---|
| 649 | exit(-1); |
|---|
| 650 | } |
|---|
| 651 | if (end_threads) { |
|---|
| 652 | return(0); |
|---|
| 653 | } |
|---|
| 654 | |
|---|
| 655 | /* Get parameters for this thread */ |
|---|
| 656 | blocksize = params.blocksize; |
|---|
| 657 | ebsize = blocksize + params.typesize*sizeof(int32_t); |
|---|
| 658 | compress = params.compress; |
|---|
| 659 | nbytes = params.nbytes; |
|---|
| 660 | ntbytes = params.ntbytes; |
|---|
| 661 | nblocks = params.nblocks; |
|---|
| 662 | leftover = params.leftover; |
|---|
| 663 | bstarts = params.bstarts; |
|---|
| 664 | src = params.src; |
|---|
| 665 | dest = params.dest; |
|---|
| 666 | tmp = params.tmp[tid]; |
|---|
| 667 | tmp2 = params.tmp2[tid]; |
|---|
| 668 | |
|---|
| 669 | giveup = 0; |
|---|
| 670 | if (compress) { |
|---|
| 671 | /* Compression always has to follow the block order */ |
|---|
| 672 | pthread_mutex_lock(&count_mutex); |
|---|
| 673 | nblock++; |
|---|
| 674 | nblock_ = nblock; |
|---|
| 675 | pthread_mutex_unlock(&count_mutex); |
|---|
| 676 | tblock = nblocks; |
|---|
| 677 | } |
|---|
| 678 | else { |
|---|
| 679 | /* Decompression can happen using any order. We choose |
|---|
| 680 | sequential block order on each thread */ |
|---|
| 681 | |
|---|
| 682 | /* Blocks per thread */ |
|---|
| 683 | tblocks = nblocks / nthreads; |
|---|
| 684 | leftover2 = nblocks % nthreads; |
|---|
| 685 | tblocks = (leftover2>0)? tblocks+1: tblocks; |
|---|
| 686 | |
|---|
| 687 | nblock_ = tid*tblocks; |
|---|
| 688 | tblock = nblock_ + tblocks; |
|---|
| 689 | if (tblock > nblocks) { |
|---|
| 690 | tblock = nblocks; |
|---|
| 691 | } |
|---|
| 692 | ntbytes = 0; |
|---|
| 693 | } |
|---|
| 694 | |
|---|
| 695 | /* Loop over blocks */ |
|---|
| 696 | leftoverblock = 0; |
|---|
| 697 | while ((nblock_ < tblock) && !giveup) { |
|---|
| 698 | bsize = blocksize; |
|---|
| 699 | if (nblock_ == (nblocks - 1) && (leftover > 0)) { |
|---|
| 700 | bsize = leftover; |
|---|
| 701 | leftoverblock = 1; |
|---|
| 702 | } |
|---|
| 703 | if (compress) { |
|---|
| 704 | cbytes = blosc_c(bsize, leftoverblock, 0, ebsize, |
|---|
| 705 | src+nblock_*blocksize, tmp2, tmp); |
|---|
| 706 | } |
|---|
| 707 | else { |
|---|
| 708 | cbytes = blosc_d(bsize, leftoverblock, |
|---|
| 709 | src+bstarts[nblock_], dest+nblock_*blocksize, |
|---|
| 710 | tmp, tmp2); |
|---|
| 711 | } |
|---|
| 712 | |
|---|
| 713 | /* Check whether current thread has to giveup */ |
|---|
| 714 | /* This is critical in order to not overwrite variables */ |
|---|
| 715 | if (giveup != 0) { |
|---|
| 716 | break; |
|---|
| 717 | } |
|---|
| 718 | |
|---|
| 719 | /* Check results for the decompressed block */ |
|---|
| 720 | if (cbytes < 0) { /* compr/decompr failure */ |
|---|
| 721 | /* Set cbytes code error first */ |
|---|
| 722 | pthread_mutex_lock(&count_mutex); |
|---|
| 723 | params.ntbytes = cbytes; |
|---|
| 724 | pthread_mutex_unlock(&count_mutex); |
|---|
| 725 | giveup = 1; /* give up (de-)compressing after */ |
|---|
| 726 | break; |
|---|
| 727 | } |
|---|
| 728 | |
|---|
| 729 | if (compress) { |
|---|
| 730 | /* Start critical section */ |
|---|
| 731 | pthread_mutex_lock(&count_mutex); |
|---|
| 732 | if (cbytes == 0) { /* uncompressible buffer */ |
|---|
| 733 | params.ntbytes = 0; |
|---|
| 734 | pthread_mutex_unlock(&count_mutex); |
|---|
| 735 | giveup = 1; /* give up compressing */ |
|---|
| 736 | break; |
|---|
| 737 | } |
|---|
| 738 | bstarts[nblock_] = params.ntbytes; /* update block start counter */ |
|---|
| 739 | ntdest = params.ntbytes; |
|---|
| 740 | if (ntdest+cbytes > (int32_t)nbytes) { /* uncompressible buffer */ |
|---|
| 741 | params.ntbytes = 0; |
|---|
| 742 | pthread_mutex_unlock(&count_mutex); |
|---|
| 743 | giveup = 1; |
|---|
| 744 | break; |
|---|
| 745 | } |
|---|
| 746 | nblock++; |
|---|
| 747 | nblock_ = nblock; |
|---|
| 748 | params.ntbytes += cbytes; /* update return bytes counter */ |
|---|
| 749 | pthread_mutex_unlock(&count_mutex); |
|---|
| 750 | /* End of critical section */ |
|---|
| 751 | |
|---|
| 752 | /* Copy the compressed buffer to destination */ |
|---|
| 753 | memcpy(dest+ntdest, tmp2, cbytes); |
|---|
| 754 | } |
|---|
| 755 | else { |
|---|
| 756 | nblock_++; |
|---|
| 757 | } |
|---|
| 758 | /* Update counter for this thread */ |
|---|
| 759 | ntbytes += cbytes; |
|---|
| 760 | |
|---|
| 761 | } /* closes while (nblock_) */ |
|---|
| 762 | |
|---|
| 763 | if (!compress && !giveup) { |
|---|
| 764 | /* Update global counter for all threads (decompression only) */ |
|---|
| 765 | pthread_mutex_lock(&count_mutex); |
|---|
| 766 | params.ntbytes += ntbytes; |
|---|
| 767 | pthread_mutex_unlock(&count_mutex); |
|---|
| 768 | } |
|---|
| 769 | |
|---|
| 770 | /* Meeting point for all threads (wait for finalization) */ |
|---|
| 771 | rc = pthread_barrier_wait(&barr_finish); |
|---|
| 772 | if (rc != 0 && rc != PTHREAD_BARRIER_SERIAL_THREAD) { |
|---|
| 773 | printf("Could not wait on barrier (finish)\n"); |
|---|
| 774 | exit(-1); |
|---|
| 775 | } |
|---|
| 776 | /* Reset block counter */ |
|---|
| 777 | nblock = -1; |
|---|
| 778 | |
|---|
| 779 | } /* closes while(1) */ |
|---|
| 780 | |
|---|
| 781 | /* This should never be reached, but anyway */ |
|---|
| 782 | return(0); |
|---|
| 783 | } |
|---|
| 784 | |
|---|
| 785 | |
|---|
| 786 | int init_threads(void) |
|---|
| 787 | { |
|---|
| 788 | int32_t tid, rc; |
|---|
| 789 | |
|---|
| 790 | /* Initialize mutex and condition variable objects */ |
|---|
| 791 | pthread_mutex_init(&count_mutex, NULL); |
|---|
| 792 | |
|---|
| 793 | /* Barrier initialization */ |
|---|
| 794 | pthread_barrier_init(&barr_init, NULL, nthreads+1); |
|---|
| 795 | pthread_barrier_init(&barr_inter, NULL, nthreads); |
|---|
| 796 | pthread_barrier_init(&barr_finish, NULL, nthreads+1); |
|---|
| 797 | |
|---|
| 798 | /* Initialize and set thread detached attribute */ |
|---|
| 799 | pthread_attr_init(&ct_attr); |
|---|
| 800 | pthread_attr_setdetachstate(&ct_attr, PTHREAD_CREATE_JOINABLE); |
|---|
| 801 | |
|---|
| 802 | /* Finally, create the threads in detached state */ |
|---|
| 803 | for (tid = 0; tid < nthreads; tid++) { |
|---|
| 804 | tids[tid] = tid; |
|---|
| 805 | rc = pthread_create(&threads[tid], &ct_attr, t_blosc, (void *)&tids[tid]); |
|---|
| 806 | if (rc) { |
|---|
| 807 | fprintf(stderr, "ERROR; return code from pthread_create() is %d\n", rc); |
|---|
| 808 | fprintf(stderr, "\tError detail: %s\n", strerror(rc)); |
|---|
| 809 | exit(-1); |
|---|
| 810 | } |
|---|
| 811 | } |
|---|
| 812 | |
|---|
| 813 | init_threads_done = 1; /* Initialization done! */ |
|---|
| 814 | |
|---|
| 815 | return(0); |
|---|
| 816 | } |
|---|
| 817 | |
|---|
| 818 | |
|---|
| 819 | int blosc_set_nthreads(int nthreads_new) |
|---|
| 820 | { |
|---|
| 821 | int32_t nthreads_old = nthreads; |
|---|
| 822 | int32_t t, rc; |
|---|
| 823 | void *status; |
|---|
| 824 | |
|---|
| 825 | if (nthreads_new > MAX_THREADS) { |
|---|
| 826 | fprintf(stderr, "Error. nthreads cannot be larger than MAX_THREADS (%d)", |
|---|
| 827 | MAX_THREADS); |
|---|
| 828 | return -1; |
|---|
| 829 | } |
|---|
| 830 | else if (nthreads_new <= 0) { |
|---|
| 831 | fprintf(stderr, "Error. nthreads must be a positive integer"); |
|---|
| 832 | return -1; |
|---|
| 833 | } |
|---|
| 834 | else if (nthreads_new != nthreads) { |
|---|
| 835 | if (nthreads > 1 && init_threads_done) { |
|---|
| 836 | /* Tell all existing threads to end */ |
|---|
| 837 | end_threads = 1; |
|---|
| 838 | rc = pthread_barrier_wait(&barr_init); |
|---|
| 839 | if (rc != 0 && rc != PTHREAD_BARRIER_SERIAL_THREAD) { |
|---|
| 840 | printf("Could not wait on barrier (init)\n"); |
|---|
| 841 | exit(-1); |
|---|
| 842 | } |
|---|
| 843 | /* Join exiting threads */ |
|---|
| 844 | for (t=0; t<nthreads; t++) { |
|---|
| 845 | rc = pthread_join(threads[t], &status); |
|---|
| 846 | if (rc) { |
|---|
| 847 | fprintf(stderr, "ERROR; return code from pthread_join() is %d\n", rc); |
|---|
| 848 | fprintf(stderr, "\tError detail: %s\n", strerror(rc)); |
|---|
| 849 | exit(-1); |
|---|
| 850 | } |
|---|
| 851 | } |
|---|
| 852 | init_threads_done = 0; |
|---|
| 853 | end_threads = 0; |
|---|
| 854 | } |
|---|
| 855 | nthreads = nthreads_new; |
|---|
| 856 | if (nthreads > 1) { |
|---|
| 857 | /* Launch a new pool of threads */ |
|---|
| 858 | init_threads(); |
|---|
| 859 | } |
|---|
| 860 | return nthreads_old; |
|---|
| 861 | } |
|---|
| 862 | return 0; |
|---|
| 863 | } |
|---|
| 864 | |
|---|
| 865 | |
|---|
| 866 | /* Free possible memory temporaries and thread resources */ |
|---|
| 867 | void blosc_free_resources(void) |
|---|
| 868 | { |
|---|
| 869 | int32_t t, rc; |
|---|
| 870 | void *status; |
|---|
| 871 | |
|---|
| 872 | /* Release temporaries */ |
|---|
| 873 | if (init_temps_done) { |
|---|
| 874 | release_temporaries(); |
|---|
| 875 | } |
|---|
| 876 | |
|---|
| 877 | /* Finish the possible thread pool */ |
|---|
| 878 | if (nthreads > 1 && init_threads_done) { |
|---|
| 879 | /* Tell all existing threads to end */ |
|---|
| 880 | end_threads = 1; |
|---|
| 881 | rc = pthread_barrier_wait(&barr_init); |
|---|
| 882 | if (rc != 0 && rc != PTHREAD_BARRIER_SERIAL_THREAD) { |
|---|
| 883 | exit(-1); |
|---|
| 884 | } |
|---|
| 885 | /* Join exiting threads */ |
|---|
| 886 | for (t=0; t<nthreads; t++) { |
|---|
| 887 | rc = pthread_join(threads[t], &status); |
|---|
| 888 | if (rc) { |
|---|
| 889 | fprintf(stderr, "ERROR; return code from pthread_join() is %d\n", rc); |
|---|
| 890 | fprintf(stderr, "\tError detail: %s\n", strerror(rc)); |
|---|
| 891 | exit(-1); |
|---|
| 892 | } |
|---|
| 893 | } |
|---|
| 894 | |
|---|
| 895 | /* Release mutex and condition variable objects */ |
|---|
| 896 | pthread_mutex_destroy(&count_mutex); |
|---|
| 897 | |
|---|
| 898 | /* Barriers */ |
|---|
| 899 | pthread_barrier_destroy(&barr_init); |
|---|
| 900 | pthread_barrier_destroy(&barr_inter); |
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| 901 | pthread_barrier_destroy(&barr_finish); |
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| 902 | |
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| 903 | /* Thread attributes */ |
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| 904 | pthread_attr_destroy(&ct_attr); |
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| 905 | |
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| 906 | init_threads_done = 0; |
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| 907 | end_threads = 0; |
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| 908 | } |
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| 909 | } |
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| 910 | |
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| 911 | |
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| 912 | /* Force the use of a specific blocksize. If 0, an automatic |
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| 913 | blocksize will be used (the default). */ |
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| 914 | void blosc_set_blocksize(size_t size) |
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| 915 | { |
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| 916 | force_blocksize = size; |
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| 917 | } |
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| 918 | |
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